rs49492607 SNP Detail

Summary

• ID
  rs49492607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45159193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTATGG CAAAGGAAGG
  CGGGTAAACG ACACGCCTCA GCGTATCAAA CAGGGGATCC CTTGGAGTTT TCTCCAGGGC
  CCTGGGGATG GCAAGCACCA CTGCAAAGAC GCCAGCGACC AGGGCAGGGC TACTCACCGG
  GGTCTCAGTG GCCTGGCTGT CCTCCTGAGG AGGTGCTGCG CGGTCCACGG GCACTGCCAG
  Y
  ACAGCAGACA GCATCAGTAG AGGTGGTAGG AGAAGAAAAG GGGCCCCGCG GGGCACCGAG
  GTAGGCATCG TGGCTGGTCT GTGAGGAGAG ATGGAGAATG AGGTTTTTTT CTTGTTTTGC
  TACGGTTTTC TGAGCTGTGT ATTAAGTAGC CTAAGTTGGC CTTGAATTCC TGACCCTCCT
  GACTCTCCCT TCCAAGCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003336	NES16128357	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	C	T	T	C
ss149136083	ENSMUSSNP5153583	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49492607					SNP	C	T	C	C	C	C	C	T	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003336	NES16128357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45159193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	within coordinates
Nucb1	nucleobindin 1	within coordinates
Rr400313	regulatory region 400313	512 bp upstream
Rr646471	regulatory region 646471	1811 bp distal
Rr646472	regulatory region 646472	within coordinates
Rr646473	regulatory region 646473	547 bp proximal
Rr646474	regulatory region 646474	1270 bp proximal
Tssr72423	transcription start site region 72423	582 bp downstream
Tssr72424	transcription start site region 72424	597 bp downstream
Tssr72425	transcription start site region 72425	631 bp downstream
Tulp2	TUB like protein 2	within coordinates