rs49492955 SNP Detail

Summary

• ID
  rs49492955
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAATAAGACA AAAGACAGAC TGCACTTGTA GACCCCTGGC
  AGACTGTGAT CCGAAATCCG ATTTTATCAA TAAATTCAGA CAAACATCAG GGATGGGTCT
  T
  AGGGAAGGAT ACGACCTCAT CAAATAACAA ACTTATCCCA GTTAGAGAAC CGATGAGGTT
  TAAGGTAGTA AGTACACTCA CAACATTAAA TAAAATGCGT C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144900216	ENSMUSSNP3417453	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49492955					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	155 bp proximal
Cpgi541	CpG island 541	1422 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	539 bp downstream
Tssr12874	transcription start site region 12874	745 bp downstream
Tssr12875	transcription start site region 12875	785 bp downstream