rs49493372 SNP Detail

Summary

• ID
  rs49493372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123651849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGTCAG ATGGTGCTAA
  TGTTTAAATA GCTTACTTCA AATAGTCTCT CAAGGTGAAG CAGAGTGTGC ATGTGGAAGT
  CAGTTAATGG GAACCAGGTC TCTCTCTCTC CATTTGGGTC CCAGGGACTT GGTTCAGGTG
  GCCAGGCTTG GCGGCCTTTA CCCGCTGAGC TCACTCAGCC CAGTTTCTCC ATTTTCTGTG
  R
  TGCTACGCAA ATGGCAGAGC TCACAGTTTA CATCTGTATG CACAGCTGGC TCCTTTTCAG
  TTCTGGCAAT ACTATATCCC TGCAGTGACT GGTCTGAGCA CCTTGTAAAC ATTTCAGAAA
  GTGTCTCCTT GAGCGACAAA TGATGTCCTT TATTGTAAAG TATCACTAGT GTGATTAGAC
  CACAGTGCCT TTAAAGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834159	NES16018736	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49493372					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834159	NES16018736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123651849 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	1904 bp downstream
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	within coordinates
Rr620216	regulatory region 620216	1359 bp distal