rs49493867 SNP Detail

Summary

• ID
  rs49493867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGATATA AATCGGTGTG
  AGAGTGTGAG GTCCAGCTGT GCTGTAGCAG AAGCTTGGGA GCCTCACCGG TGAATGCCTG
  TATCCTGCGG GAAAGCATCC TTCCCCATGT GGGAGAGGTG GAGTGCAAAG GCCTACAGTG
  GCTAAGCCAT TGATGATGGG CACTCTATCA AACTTGGCTC CCTTCCTCTT TGTCTTTCCT
  Y
  CCCAACCCGT GGTGGGGTGA GGGTGGGTGA ATGCGACCAT CAGACTAGCA CCTGGGTGCC
  TACTTCTTTT GTTCGATTTG ATAAATAAAC CCCTTCCCCA CAGGACACAT GGCTCGAAGG
  GCTCCCCGTG TTGCTCCTTA GGATGCTAGG CCTGGCTTAC CATTGTCTGC TTAACTGATT
  TCCTTATGTT TAGCATCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042993	ENSMUSSNP5855560	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321009825	CHEV_3_145972840	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49493867					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015631 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	1920 bp proximal
Rr586996	regulatory region 586996	1052 bp proximal