rs49494059 SNP Detail

Summary

• ID
  rs49494059
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32052823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTGTTTTGT TTTGTTTTAA GAAAAAAAAT TTATGTCACA
  AAAATTTTGT TGTTGTTGCT TTTGGGATTG AACCTTGGTC TGTTGGCCTG ACCCACCCCA
  K
  CCACACCCTA GCCCTGGTTG CAGCTTTTGT TCTACAAATT ACCCCTCAGC TGGAGTCCTT
  CTCCTCATAA TGGCCTGAGG TCTTCTGAGA AGTGGTGGTG T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146404136	ENSMUSSNP3561832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49494059					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32052823 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr373004	regulatory region 373004	within coordinates
Rr554828	regulatory region 554828	1588 bp distal
Rr554829	regulatory region 554829	343 bp distal
Rr554830	regulatory region 554830	395 bp distal
Rr554831	regulatory region 554831	1701 bp proximal
Tssr17249	transcription start site region 17249	401 bp downstream
Tssr17250	transcription start site region 17250	226 bp upstream