rs49494064 SNP Detail

Summary

• ID
  rs49494064
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGCAGTG GGATAACATT
  ATCTAGAAGG AGAATCCTAG GTGGCTTGGC TTGTTCCCAA ACAGAATTCC CAAGGCTGAA
  GAAAAGAAGT GGGTTATACA TCTTCCTGAA GGCCAGGCCA CCAGAAAGCA GCTGTGGTTG
  TTAGGCAGAG GGAAACCCAT TGCTGGCCCC GGCCTACTTT CTGTTTCATA CTCTCCTCTC
  C
  GGCCACCTGC CCACACTATG ATGGCAGAGC TCTGCGGTTA AAATAGAGCT CCTGTAGCCT
  GTTAAGCCAG ACCAAAGTTC ATCCTGGGAA CCAATGAGTT TACTCGTCAC TTACAGATGG
  ATGGTGACCC TAAAGCAGTA CACATAGGAA GATCAGCACC CAGCATGGAC AATGACTCCC
  TCATGGCCGT GTGCTGTAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149056719	ENSMUSSNP108434	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49494064					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975641 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1304 bp downstream
Rr616963	regulatory region 616963	258 bp distal
Rr616964	regulatory region 616964	within coordinates