rs49495534 SNP Detail

Summary

• ID
  rs49495534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19427510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGAATA AACCCTTTTG
  CTCCACAACT TGCTTCTTGG TCCTGATATT TGTGCGGGAA TAGAAACCCT GACTAAGACA
  GGTGGTAAGT ATCATGTTTT GTTTCCATTC ATAGTCCTTC AGCTATGTAA CAGTCTTGCT
  TTCAGAGGCT TATGTTTAGT GGACATTAAG AAGGTAGATC CTTGTCTTAG AGTTTTACTT
  Y
  TGTGAACATA TACCATGACC AAGGCAACGC TTACAAGAAC AACATTTAAC TGGGACTGGT
  ATACAGGTTC AGAGGTTCAG TCCATTATCA TCAAGGCAGG AGGATGGCAG CATCCAGGCA
  GGCATGGTGC AGGTGAAGCT GAGAGTTCTA CATCTTTATC TGAAGGCTGC TATGAGGAAA
  CTACAATTCT AGGCAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134667472	ENSMUSSNP6952854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320678654	CHEV_3_19273346	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49495534					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19427510 () rs orientation: forward

Symbol	Name	Function Class
Gm42188	predicted gene, 42188	833 bp upstream