rs49495928 SNP Detail

Summary

• ID
  rs49495928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26752473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGA CTTCCAGATA CAGTGCAGGA
  Y
  TCGATGGCAT GGGAGTTACA GTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss145405343	ENSMUSSNP1432652	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325342261	CHEV_17_26670444	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs49495928					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26752473 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Gm64855	predicted gene, 64855	1834 bp upstream
Tssr5048	transcription start site region 5048	1832 bp upstream
Tssr5049	transcription start site region 5049	1899 bp downstream
Tssr143239	transcription start site region 143239	1660 bp downstream
Tssr143240	transcription start site region 143240	613 bp downstream
Tssr143241	transcription start site region 143241	599 bp downstream
Tssr143242	transcription start site region 143242	569 bp downstream
Tssr143243	transcription start site region 143243	544 bp downstream
Tssr143244	transcription start site region 143244	527 bp downstream
Tssr143245	transcription start site region 143245	626 bp upstream
Tssr146959	transcription start site region 146959	1802 bp upstream
Tssr146960	transcription start site region 146960	882 bp upstream
Tssr146961	transcription start site region 146961	852 bp upstream
Tssr146962	transcription start site region 146962	823 bp upstream
Tssr146963	transcription start site region 146963	776 bp upstream