rs49496018 SNP Detail

Summary

• ID
  rs49496018
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53764781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGAAAAG AAAAAGTGTC
  AAATCTCCAA GACTCACAAG TCCACAGAAG CTATCTCCCA GCAGTTCCTT AGTTTATTTC
  ATGTTTTCAT TAGCTAGCTT TAAAAAATGT TCCTTAGATA TAGATATAGT TTATATCTCT
  AGGTTGTGGT TTACTTATAT TGTAGTACCT GAATATATTT ATGTGCATTA TAAGTAGATA
  G
  ATATACATGC ACACACAATA TCAGTTCTTT TGTTTCTATT CAGTGATGGT GTTGATACAT
  TCTGAAAATA TTTCAAACTT TTTCTACATT TTTAACTGAG AACATAGAGA CAAATAGAGA
  ATACACAAAG AAAAATTATA ATTTTCCCTC TTTCAACTGT GGCAAATGAG ATGATTAGTA
  ACATTTCCTG TTTTATGTTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137758440	ENSMUSSNP1448326	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs49496018					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53764781 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1820 bp proximal
Rr263732	regulatory region 263732	1907 bp proximal