rs49496215 SNP Detail

Summary

• ID
  rs49496215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCTCGG TCCCCAAAGC
  AAAAGCCCCA GATCTTAAAG GACTTAAAAC CAGGGGTGGT GGCACATTTG CACAGTCAAA
  GATAATCAGG AAGCTGAGGC AGGAGGATAG CTTGAGTTGA GCAATTTAAA GCTAATTTGA
  GTAACATTGA TAACCTACCT AAAGGAGAAA GGTAATTTCG TTCTTTGGGG CTTGCCACTT
  Y
  TTACTGACAG CCTTCATTTC CCCAACAGTT CGTGATTAAG GACTTTTCAG AAACCTTTCT
  CCCCTTAGGA ATGGAGTGAA TATTCATTTT AAATTTAATA ACCTTCAGCC AGGCATGGTG
  GCATAGACCT TTGACCCCTG CAGTAGAGAC GAAGAGACAA GTGAGTTCAA GATAGTGTGT
  CCACGAGTCC ACACAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52226746	NES15329402	PERLEGEN	MM_PANEL2	f	SNP	C	C		T
ss323498899	CHEV_10_117149283	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs49496215					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226746	NES15329402	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1119 bp distal
Gm56970	predicted gene, 56970	694 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1469 bp upstream
Rr212986	regulatory region 212986	1669 bp proximal
Rr224309	regulatory region 224309	531 bp distal
Rr385357	regulatory region 385357	within coordinates
Tssr95923	transcription start site region 95923	1280 bp downstream
Tssr95924	transcription start site region 95924	471 bp downstream
Tssr99466	transcription start site region 99466	1924 bp upstream
Tssr99467	transcription start site region 99467	1566 bp upstream
Tssr99468	transcription start site region 99468	1491 bp upstream
Tssr99469	transcription start site region 99469	1454 bp upstream