rs49496398 SNP Detail

Summary

• ID
  rs49496398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56904264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCTCTC TGGTGAAACT
  TACTCCACAC ACTTAGATTA ATAAAGGAGA GAGCTCTTTA ATAATACCAT AAATCTGGCT
  CTGGATACTG CTCAAAGAGG AGCTAGTTGT GAACAGATTT TTTACTAACT TACACTCATT
  TTCGGCTTAT ACATGCCACA TAAGCTATTA TTCTGAAATC TCTTTCAGGT TCCAGATGCA
  R
  GTTACTCTTG GAACAATTTT AATACAGACA GGAGACTGAA AGTCTAGTCA CTCAGGCAGA
  TACAAGAGGT ACACAGCGAA GATAGTCAGA ATTATTTCTA AGCATATACA CCAGTGTTGT
  TCTTTTCAAA TAGTTGTTAT TCAGGGTCCT CTTGCCTACC TACCAGCAGA GTTAGGCTTT
  TCCTCACAAG GGCACAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52725525	NES15565030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49496398					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52725525	NES15565030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56904264 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps18	basic transcription factor 3, pseudogene 18	600 bp upstream
Cpgi6529	CpG island 6529	1041 bp proximal
Gm62612	predicted gene, 62612	within coordinates
Mphosph8	M-phase phosphoprotein 8	1441 bp upstream
Rr369836	regulatory region 369836	1176 bp upstream
Rr492707	regulatory region 492707	548 bp proximal
Rr492708	regulatory region 492708	1297 bp proximal
Rr492709	regulatory region 492709	1406 bp proximal
Tssr125847	transcription start site region 125847	1435 bp upstream
Tssr128934	transcription start site region 128934	1214 bp downstream