rs49496659 SNP Detail

Summary

• ID
  rs49496659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCATG CTTTTATTTC
  TAACCAATAA AGTGAAAACG TTCTGATTTT CTCTACATAG ATTTTAGCTA AAAATAGCAC
  AGGGTTCAGG TAGGAATTTC CTGTGCTCAT GGTCAATGAA TGGCACATTA CGGTTTATAC
  TATCCCTTGA GAATGAATTT ATTTCAAAAG AAAAAGGTCT GGAGATGTGG CTCAGTGGCA
  Y
  CGTGCTTGAG CAGAGTGTGT GAAGCCATGC CTCCATCCTC ACACTGGAGA AATGACACAG
  CAACAATTTA AATCTATATG AAAAAAATTT CTTTCAGTTT TCCATTGTAA GCCACTAAAG
  GCTAAAACAT ATGTCTTAAC CAGTCCTGTT CAATAACAGA CAAGGAAAAG TTCTTTTCAG
  GAAAGGGTTT CCACCTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435745	NES15935086	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49496659					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435745	NES15935086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1067 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			556 bp distal
Rr583801	regulatory region 583801			915 bp distal
Rr583802	regulatory region 583802			674 bp distal
Rr583803	regulatory region 583803			912 bp proximal
Tssr31391	transcription start site region 31391			1450 bp downstream
Tssr31392	transcription start site region 31392			1368 bp downstream
Tssr31393	transcription start site region 31393			1341 bp downstream
Tssr31394	transcription start site region 31394			1304 bp downstream
Tssr31395	transcription start site region 31395			658 bp downstream
Tssr31396	transcription start site region 31396			1317 bp upstream