rs49497624 SNP Detail

Summary

• ID
  rs49497624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52142537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG AAATAAAAAC TCAAAGAAGT
  R
  AAAAACAAAA ACAAGAAAAT AACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss60410375	NES15916679	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		A	G
ss320764101	CHEV_3_52039038	CHEVERUD	SCREENING_POP	f	SNP					A			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs49497624					SNP	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410375	NES15916679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52142537 () rs orientation: forward

Symbol	Name	Function Class
Gm38132	predicted gene, 38132	within coordinates
Or14m1-ps1	olfactory receptor family 14 subfamily M member 1, pseudogene 1	1722 bp downstream
Rr374955	regulatory region 374955	822 bp downstream
Rr576473	regulatory region 576473	1557 bp proximal