rs49498308 SNP Detail

Summary

• ID
  rs49498308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31343349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACCATAC AGGCTCAAAT
  GTCTGTCTCT GGAGTTTACT CTGATGGTCC TTTAAGATGT GGGTTCTAAC GGTTCTCCCC
  ACCCCCCCGT GCACCCTGGG TGTCATGGTC AATGTGACAA TCAGTCAGTG TGATATGTTT
  TAAATGTGAC TTGCCAAAAA AAATCACACT GAACCATCAT TTCTAGTGCA GTGGTTAAGG
  R
  ACCAAGGTCT CTCCCAGGAG GAAGAAACCA GGAAACCCCA GCACAATGAG AAGCAATGTT
  TCCTGGCCCC TGTGTTGTGT AAATGAGCCA TAGAGTAGCC TGGATGATGT GGCCCTGAGA
  TGGTCCCCTG TGGGAGTAGA CCTAGGGATT AGCCATGCAG CACAGGAAGG TGCCTCCACC
  CCCAAACCTT CCCATGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562269	NES16490752	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49498308					SNP	A	A	A	A	A	A	A	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562269	NES16490752	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31343349 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1749 bp distal
Rr334775	regulatory region 334775	852 bp proximal
Rr341219	regulatory region 341219	1949 bp distal
Tff3	trefoil factor 3, intestinal	931 bp downstream