rs49498553 SNP Detail

Summary

• ID
  rs49498553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167436290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG AGATACAGGT GGCTGTGAGC
  Y
  ACTGGGCATG GCTGCTGGGA ACTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148264327	ENSMUSSNP2957335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49498553					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167436290 () rs orientation: forward

Symbol	Name	Function Class
Gm11476	predicted gene 11476	within coordinates
Rr374233	regulatory region 374233	940 bp upstream
Rr570653	regulatory region 570653	within coordinates
Rr570654	regulatory region 570654	1965 bp proximal