rs49499039 SNP Detail

Summary

• ID
  rs49499039
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51361571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTGAGGC ACACAGGGCT GTTGTGAATC CTAAGAGAAG
  ACTCTGCTAA GTTAATTCTG AGGATAACCC TAAATGGAGA GGTCCACACA GACATCTAAT
  K
  AACTAGTGCA CATAGGCAGA AAATACAGCA GATACAGTCC TCAGACATGA AAATGGGAAT
  CAGTGTGACA ATAAAAGGCT GGAACTATGA GAAGGAAGCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288986	NES15304960	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49499039					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288986	NES15304960	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51361571 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93246	transcription start site region 93246	1870 bp downstream
Tssr93247	transcription start site region 93247	1827 bp downstream
Tssr93248	transcription start site region 93248	1786 bp downstream
Tssr93249	transcription start site region 93249	1620 bp downstream
Tssr93250	transcription start site region 93250	1159 bp downstream
Tssr93251	transcription start site region 93251	1098 bp downstream
Tssr93252	transcription start site region 93252	1003 bp downstream
Tssr93253	transcription start site region 93253	807 bp downstream
Tssr93254	transcription start site region 93254	674 bp downstream
Tssr93255	transcription start site region 93255	456 bp downstream
Tssr93256	transcription start site region 93256	353 bp downstream
Tssr93257	transcription start site region 93257	within coordinates
Tssr93258	transcription start site region 93258	235 bp upstream
Tssr93259	transcription start site region 93259	277 bp upstream
Tssr97554	transcription start site region 97554	274 bp downstream
Tssr97555	transcription start site region 97555	836 bp downstream