rs49499096 SNP Detail

Summary

• ID
  rs49499096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TAAAATATTC AGTTCAGATC
  Y
  GGTGCTGGAA ACCTGCCCTT CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328623	NES15372064	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	C	T	C	T	T	T	C	C
ss137438970	ENSMUSSNP5402171	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49499096					SNP	T	T	T	C	T	T	T	C	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328623	NES15372064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492230 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1118 bp distal
Rr464136	regulatory region 464136	1891 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	515 bp downstream
Tssr112998	transcription start site region 112998	1510 bp upstream
Tssr112999	transcription start site region 112999	1557 bp upstream
Tssr113000	transcription start site region 113000	1681 bp upstream
Tssr115902	transcription start site region 115902	626 bp downstream
Tssr115903	transcription start site region 115903	958 bp downstream
Tssr115904	transcription start site region 115904	975 bp downstream
Tssr115905	transcription start site region 115905	1280 bp downstream
Tssr115906	transcription start site region 115906	1408 bp downstream
Tssr115907	transcription start site region 115907	1463 bp downstream
Tssr115908	transcription start site region 115908	1503 bp downstream
Tssr115909	transcription start site region 115909	1589 bp downstream
Tssr115910	transcription start site region 115910	1641 bp downstream
Tssr115911	transcription start site region 115911	1691 bp downstream
Tssr115912	transcription start site region 115912	1705 bp downstream
Tssr115913	transcription start site region 115913	1740 bp downstream
Tssr115914	transcription start site region 115914	1792 bp downstream
Tssr115915	transcription start site region 115915	1821 bp downstream
Tssr115916	transcription start site region 115916	1878 bp downstream
Tssr115917	transcription start site region 115917	1924 bp downstream
Tssr115918	transcription start site region 115918	1943 bp downstream
Tssr115919	transcription start site region 115919	1970 bp downstream
Tssr115920	transcription start site region 115920	1997 bp downstream