rs49499844 SNP Detail

Summary

• ID
  rs49499844
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45018794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACCCTCA TCAGTCTTCG GTAGTTCCAC GACCCTGGGA
  TGTGCGTGGC CCTCACTGGC CGTGAAAGCA GCCACTGTGG CCTGGAAGAG AGAAGACGCC
  W
  CAATGAGAGA GACCCTCTTT GAGACATGGG CACTCCAGCC AGCGTAGCCG CAAAGATCAA
  GTAGGGGAAC CCTGACACAG CTCAACAGGA GGCTACCCTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61003685	NES16117390	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49499844					SNP	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003685	NES16117390	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45018794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	1498 bp distal
Cpgi19050	CpG island 19050	475 bp proximal
Gm45619	predicted gene 45619	666 bp downstream
Gm71276	predicted gene, 71276	1638 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	1422 bp downstream
Rr400311	regulatory region 400311	1157 bp upstream
Rr646422	regulatory region 646422	1183 bp distal
Rr646423	regulatory region 646423	1203 bp proximal
Rr646424	regulatory region 646424	1261 bp proximal
Rr646425	regulatory region 646425	1330 bp proximal
Tssr72377	transcription start site region 72377	1189 bp downstream