rs49500353 SNP Detail

Summary

• ID
  rs49500353
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75990039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCTTTTC AGGAGCACAT TGCAGGGCAG TGTTGGAAGA
  AACACATTTT TTACTTGAGC TTTAGTGCGA CTTGAATGGT TTTCTCTGGG ATCTTGGTGT
  M
  AAGCATTGGG AATTATTTCA TTCAAAAATC TGCATGGTAG TGCCAACCAT AAGTGTGTAT
  TTTACAGCTA TAGGACGAGG TCTTGGAGCA GGGACACAGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52665254	NES15473175	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49500353					SNP	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665254	NES15473175	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75990039 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	within coordinates
Rr482793	regulatory region 482793	2000 bp distal
Rr482794	regulatory region 482794	49 bp proximal
Rr482795	regulatory region 482795	1846 bp proximal
Tssr120402	transcription start site region 120402	1992 bp downstream
Tssr120403	transcription start site region 120403	1876 bp downstream
Tssr120404	transcription start site region 120404	1835 bp downstream