rs49500718 SNP Detail

Summary

• ID
  rs49500718
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA AAACCTAACG ACCTGATTTC
  T
  GATACCCAGG ACCTCCATGA TGGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145361186	ENSMUSSNP320098	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49500718					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468660 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	848 bp upstream
Cpgi20655	CpG island 20655	341 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1893 bp downstream
Rr666301	regulatory region 666301	771 bp distal
Rr666302	regulatory region 666302	662 bp distal
Rr666303	regulatory region 666303	within coordinates
Rr666304	regulatory region 666304	185 bp proximal
Tssr2618	transcription start site region 2618	1918 bp upstream
Tssr2619	transcription start site region 2619	1630 bp downstream
Tssr2620	transcription start site region 2620	734 bp downstream
Tssr2621	transcription start site region 2621	524 bp upstream
Tssr78291	transcription start site region 78291	1675 bp downstream
Tssr78292	transcription start site region 78292	1653 bp downstream
Tssr78293	transcription start site region 78293	1512 bp downstream
Tssr78294	transcription start site region 78294	1457 bp downstream
Tssr78295	transcription start site region 78295	1411 bp downstream
Tssr78296	transcription start site region 78296	1392 bp downstream
Tssr78297	transcription start site region 78297	597 bp downstream
Tssr82049	transcription start site region 82049	1961 bp upstream
Tssr82050	transcription start site region 82050	1873 bp upstream
Tssr82051	transcription start site region 82051	1599 bp upstream
Tssr82052	transcription start site region 82052	841 bp upstream