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rs49500995 SNP Detail
Summary
  • ID
    rs49500995
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:33120690 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGATCAGGT TTAATGGGCG
    ACAGGAGCTA TAAAGAAGCA AGCAGGCATC TCCAGAAGCA GAACCGTTCT TTAATTAGGC
    AACCGAAAGA CAGCTCATGG TCTCTCTCAG GTGTGGAGAC TGTGTGCACA TGGTATAGAG
    GCTTGGGGCT TTACAGGGTG GAAAGGGGTG GGATGGAGAA TTCCTGCAGG TCAGTTCCCT
    Y
    CACATCTCAA AGCGGGAAAT AAGGATACCA GCAGGTGTGG CAGAACTTCC ACCAGATTTA
    TCATTCAAAT CAACTTTCTT GTCTAGACTT CCACAGTCCA TCTGAGACTT TTTTCTTTTG
    AGGTGGGAGG TAGTGGTCGA AGTTGTCTCT ACAGGGTCCT GGATGTCCTC AACTCACTAT
    GTAGATCAGG CTGGCCTGGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss62684495 NES17321854 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs49500995 SNP T T T T T T C T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss62684495 NES17321854 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:33120690 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr392536 regulatory region 392536 within coordinates
Rr525829 regulatory region 525829 1798 bp proximal
Tssr143746 transcription start site region 143746 713 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory