rs49501900 SNP Detail

Summary

• ID
  rs49501900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121711668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTACCGT CAGTTGGAAC TGTTCCATCT CTGCAATCCT
  GAATTCCACC ATCTAAACAC AACCTTCTGG CAACTGAGAA TCTTAGTTGT ATCAAAGGCA
  K
  CGAGCATCTA GATGTCACTT ACCTCTCAAC CCCCTTTGCT AGCATTTCCT TCTCCAGGCA
  ACTTAGAAAC AAGAGACCTT CCTCTTCATC TCTTTTCCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135731821	ENSMUSSNP5867008	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss320907006	CHEV_3_121620937	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49501900					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121711668 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584205	regulatory region 584205	510 bp distal