rs49502209 SNP Detail

Summary

• ID
  rs49502209
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86579839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGCTCTG CTGCAGAGGA CCCAAGTCCA GGTCCCAAGG
  CCCAAGCGGT ATGGCTTACA AATACCTGTG CATATAGCTC CAGGGGATGT GACGCCCTCT
  T
  TTGGGTTCTT CACACACTGG AGTGCGCACA CACACACACA CACACACACA CACACACACA
  CACACACACA CAGATAAACA CTTATATGCA GAAAATAAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136760269	ENSMUSSNP5934911	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49502209					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86579839 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	1417 bp distal
Gm55057	predicted gene, 55057	1257 bp downstream
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	1872 bp upstream
Rr205233	regulatory region 205233	646 bp distal
Rr206830	regulatory region 206830	1238 bp distal
Rr211051	regulatory region 211051	763 bp proximal
Tssr90788	transcription start site region 90788	1997 bp upstream
Tssr90789	transcription start site region 90789	1932 bp upstream
Tssr90790	transcription start site region 90790	1828 bp upstream