rs49502828 SNP Detail

Summary

• ID
  rs49502828
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCGACA TTGGTAATGC
  TAACCATATA CCTTTATTTG CAAAACCACC CCAGGCACTT TCCACGGTAC CAGCTGCCCT
  GGAGCATGAA GGGCAGACAG CTGTGGTACA GCATGCTTGA GGTGCATCTG ATGCCAGCAA
  GGTGATCGGG ACAGAGACCC CTTCTAAAAG CAGAACTAGA GGCAAGGGGC AAGACAAAAT
  G
  TTTAAACTTT AAATTTTTCC TATCAAAAAA AATCACTTTT TCATCCTGAC TGCCCAGTGT
  AAACCCCGAG GCACCTGTGT TATGCCCACT GTGGGAAATC TCCTGTTGTC AAAGAACTCA
  AGGCACACTA CGGTAGCAGC AATGATAATG GTTGCTGCTG TCCCGGCAGT TTGCCCTGGG
  TATGTCAGCC CAATTTGAGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss144899133	ENSMUSSNP824091	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49502828					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191021 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1010 bp downstream
Rr18062	regulatory region 18062	1221 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	1519 bp downstream