rs49503453 SNP Detail

Summary

• ID
  rs49503453
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117429182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATGTAA TGATGAAGTC
  ACACACATTT CTAACCAAAG TGGATGAGAT GAAGAAAAAA ATGAAGCAAA GGACGGAGAA
  GCCAGGAGTT GCATAGCACG AGATGTTCCT GAATCTTGTT GCTACTATCA CCTAGACATA
  AGGACACCTT CTGAACTTCA TCAAGCTCCA TGAATTCCAA GAAGAATGAA CAAGAATTAA
  S
  ATGAATTGAC AAGAAGTCTG GGGGTGGAGA AGCAGAGACA GCTTAGCAGT TAAGAGCGTG
  TAGCTCTCTT GCAGAGGACC TATACTCAAT TCCCAGCACC CATGTCCAGT AAGTCACAAA
  GGCCTGTAAG TCTAGATCCA GAGGGTCTGA AGCCCTCTTT TGTACTCTGC ATGTATCTGC
  GCATGCATGG GGCACACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61320222	NES16929075	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		G	C	C	G		C
ss323497987	CHEV_10_117030333	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49503453					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61320222	NES16929075	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117429182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	780 bp proximal
Gm63651	predicted gene, 63651	1449 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	1076 bp upstream