rs49504835 SNP Detail

Summary

• ID
  rs49504835
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCTGTAGTTT AAAAAAAAAA AAAAAAAAAA AAGCAGCTCA
  GAGTTCTGGC CACAGACCCA GACGACGGCC ATTGCAATAG AATTGTTCAG CTTAATGATA
  T
  TAAAAAAAAA AAAAAAGCAC CCAATGAAGT CCCATACCTT CTGCAGCTTT TGATAGAAGT
  TGTCTATCTA CTATGCTTCT GGGATTAAAA ATGAGTAAAC C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147246231	ENSMUSSNP1057195	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49504835					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	292 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	586 bp upstream
Gm58903	predicted gene, 58903	1409 bp downstream
Rr351670	regulatory region 351670	1706 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	779 bp downstream
Tssr153448	transcription start site region 153448	1027 bp upstream
Tssr153449	transcription start site region 153449	934 bp upstream
Tssr153450	transcription start site region 153450	910 bp upstream