rs49506274 SNP Detail

Summary

• ID
  rs49506274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77859773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTGTAA TCCCAGCACT
  TGGGAGTCGG AGCAGGCAGA TTTCTGAGTT TGAGGCCAGC CTGGTTTACA GAGTGAGTTC
  CAGGACAGCC AGGGCTACAC AGAGAAACCC TGTCTCGAAA AAACAAAAAC AAGAACAAAC
  AAACAAAAAA AGAATGATGG CCTTCTAGTC AAACTCCAGC TCAGGGGCGT GGGGATTACA
  Y
  GTGTCTACCA ACACAGGTGG CTCTTGTGTG GTTTTCCTTT TCCCCCACAC TGATGGTGCT
  GACACAAGGG CAGTCTGGAT GGTAGGTTTT CGATTGATAG TCCTTTCATT CAAAGCAGCC
  AGTGCAGCCA GAAAGAGACC AACAGCTGGC TGGTCAGGAG TCAGTTGCTA TGGCTGTCAC
  ATCACTGTTT ATTTAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555316	ENSMUSSNP6902379	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49506274					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77859773 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	1695 bp upstream
Cpgi10281	CpG island 10281	1570 bp proximal
Gm52331	predicted gene, 52331	1862 bp downstream
Haus1	HAUS augmin-like complex, subunit 1	within coordinates
Rr393942	regulatory region 393942	1163 bp upstream
Rr541176	regulatory region 541176	1166 bp proximal
Rr541177	regulatory region 541177	1667 bp proximal
Rr541178	regulatory region 541178	1803 bp proximal
Rr541179	regulatory region 541179	1894 bp proximal
Tssr152041	transcription start site region 152041	1911 bp upstream