rs49506739 SNP Detail

Summary

• ID
  rs49506739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73187846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGCGGG ACCAGCCCGA
  CGGCGCCACC GTTGACCCTG CTGTTACCAG GCGCTCACAC AGCCAATCAG CACTCGCCGC
  AAGCGCCGGC CGGCCTTTGA ACTCCGCACA GCAACTTCCT GCTGTTTGGC GAGTACACAG
  TGCAATGCAG TATGTCTGTC AGCGCTGCGG CACAAAGGAA CAGCCATTTT GTGACTGAGC
  K
  GGACTTGCAC CAAGATGCCA GGGCCTCCGA GAACTGCTGC CTGCGCCAAC TACCGAGCTG
  CCTTTTATTT CATCATCAGA GTACTTATGG GAACGTGGGG AAAAGGATGT TCTGATATTA
  GGTTTGTTTT CAGCGTTCTT AAAAATTCGA TTTTTTAAAA GTATTATTAT CAGCGTCATA
  AAATGGCTGC CACTTAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020029	NES16105281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49506739					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020029	NES16105281	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73187846 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	1700 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	within coordinates
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	within coordinates
Tssr67202	transcription start site region 67202	128 bp downstream
Tssr67203	transcription start site region 67203	40 bp downstream
Tssr67204	transcription start site region 67204	6 bp downstream
Tssr67205	transcription start site region 67205	1266 bp upstream
Tssr72947	transcription start site region 72947	332 bp upstream
Tssr72948	transcription start site region 72948	1162 bp downstream