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rs49507524 SNP Detail
Summary
  • ID
    rs49507524
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:85592318 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GACACCAAAG GCCTCCCTCG TGGGTGGATA CCTTGACCCT
    GATGTCCTGG CCTTCTCCCC ATAATGAATC CCCCGAGTCC CAGCTCCCGT CCTGAACCCA
    R
    TCTGCCTCAA CTCTGCATAT CCACACACCT CCATTGACGC ACCTAGGCAG ACCAAACACC
    CCTAGAGCCC CTCTATATCC ACCCTCAGCT ACCAGACCT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss148271398 ENSMUSSNP1373721 ENSEMBL ENSEMBL_Sanger f SNP A A G
ss325042879 CHEV_15_85538547 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs49507524 SNP A A G A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:85592318 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm34622 predicted gene, 34622 754 bp downstream
Lncppara long noncoding RNA near Ppara 593 bp downstream
Mirc31 microRNA cluster 31, including Mirlet7c-2 through Mirlet7b 714 bp distal
Mirlet7b microRNA let7b 714 bp downstream
Mirlet7c-2 microRNA let7c-2 1420 bp downstream
Rr507292 regulatory region 507292 1708 bp distal
Rr507293 regulatory region 507293 737 bp distal
Rr507294 regulatory region 507294 401 bp proximal
Rr507295 regulatory region 507295 1393 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory