rs49508571 SNP Detail

Summary

• ID
  rs49508571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TGCAGGTTAA CTTTTTTTTT
  Y
  CCCTTCTAAT TACAAAACTA CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147738310	ENSMUSSNP4386333	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49508571					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	978 bp distal
Cpgi2388	CpG island 2388	47 bp proximal
Rr213664	regulatory region 213664	1900 bp proximal
Rr224447	regulatory region 224447	700 bp distal
Rr224448	regulatory region 224448	within coordinates
Rr402345	regulatory region 402345	1021 bp downstream
Rr402346	regulatory region 402346	within coordinates
Spryd4	SPRY domain containing 4	1238 bp upstream
Tssr99849	transcription start site region 99849	1257 bp upstream
Tssr99850	transcription start site region 99850	1209 bp upstream