rs49508613 SNP Detail

Summary

• ID
  rs49508613
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94354341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCATAGG CATGGAGGGC
  CATCAGGGTT TGATCTTTTC ACTTGGCCTC CTCCCAAGAA GAGGGGCAGA GCAGTGCACA
  GGCACTAGTG TGCTTGTATC CACCAGTTAG TTAGATCAGG CTACCTCCCT GCTGGAACAT
  GTGCATTTGG CTAATGTGGC CACAGCAGTG TGGCAGAGCC AACTTCCTTA TCTGGAGTCA
  W
  CCCTCTGTGC AGTCCTTCCC TAAGAGTTGT AATGCCCAGA CAAATATCCA ACGAGGATCT
  AATTGTTGGT TCTCTATACA TCTTCAACAC CAAGGGTTGC TAAGCAACCT GTGAGCCAAA
  TCTTAGGTCT TTTCCCCACT CGAAAGAAAG ACCTTGTTGA GGTTGGAGAG AGGGCTCAGC
  GGTTAAGAGC ACTGACTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60514789	NES16523636	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49508613					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514789	NES16523636	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94354341 () rs orientation: forward

Symbol	Name	Function Class
Gm56630	predicted gene, 56630	within coordinates
Rr319889	regulatory region 319889	1060 bp proximal
Rr324753	regulatory region 324753	1938 bp proximal
Rr328341	regulatory region 328341	1193 bp distal
Rr392165	regulatory region 392165	697 bp downstream
Tssr139557	transcription start site region 139557	1258 bp downstream