rs49508928 SNP Detail

Summary

• ID
  rs49508928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25953739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCAGTT TAACACACAA
  TCCATCATTT GAGTGTATTT TGTATTCTTA ATTGTTTTTT CCTACGGCAA TTGTGGGATT
  GGAACGGAAA GACAATTCAG TATCATCAAA TTACAAGTTG AGAGGCTGTA TTAAGACACT
  GCTTGAAGTG AAACACTTCT CTCACAGAAA ACTAAAATGG ATTTTACAAG GAGTTTTTAA
  Y
  ATTCACTAAG CATCCTAATT AACCTTTGTC AGGTAGAATT AAAGCAACCA AGAAGTTTAA
  CAGAATCCAA AGACATGCAG TTGGCGGTGG CATTTTCATC CCAAGTCTCC AGCAGAGGGT
  TTGTTATTTT TCCAGGGTAA TTTTATTGTA TGGGGAGGAA AGGAAGGGTC GGTTTCATTT
  TAAACCAAAC ATGGCTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60978857	NES16140096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49508928					SNP	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60978857	NES16140096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25953739 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r-ps86	vomeronasal 1 receptor, pseudogene 86	766 bp upstream