rs49509295 SNP Detail

Summary

• ID
  rs49509295
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:107362418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGCATTT GCAAAAAATG TTTATTATTC TGCTGTTTGT
  TTATTGAGAT GGGGTTCCAT TCTAAAACTC AAGGCTGGTC CGGAGCTGAC CTGGAGCTCG
  T
  GACAATCCTC TTCCTGCCTC AACTTTCCCA TTGCTGACCT TACAGGCGTG AGCCATTGTG
  CCCAGCACTG ACATAATGTA TTAGTGTTTG CTCAACGCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145732470	ENSMUSSNP2327173	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322825759	CHEV_8_109159686	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49509295					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107362418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdh1	cadherin 1			Intron
				Noncoding-Transcript-Variant
Rr669236	regulatory region 669236			1860 bp distal
Tssr79254	transcription start site region 79254			503 bp upstream