rs49509379 SNP Detail

Summary

• ID
  rs49509379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47985109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTACCT CACACTCAAA
  CGCTAAAGGA ACAATGGATA GTGCAACATG AGTTGGAAAG CTTGCCAGAA ATGATGTATC
  TACACCATAA GCTTGCAGAA CTGCTTCAAA AGACCTTTGG GGAGGGTTGT GCTATGAGGG
  CAAAGAAATC CACAGCTTCT GGGGAGTAAG ATGAAGAGCA AAATAGAAGT GGTCAAAATA
  Y
  AATATGGCTA CCATATCTGC CTAAAACCAA ACAGTCTAGA TGAGAATGTG AAAGGGCCTT
  TTCCCTTGAT CTTAGAGGCT CCAAAGAAAT AGCTGTGGCC CTTGAATATT GACCGGCTAT
  AAGGGGAAGT AGAATAAACT TGCAAAGTTT TAAAATTAGC ACCACCTGAG AGGTATACAG
  CATGAATCAA AGAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60607590	NES16308505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49509379					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60607590	NES16308505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47985109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	1006 bp proximal
Rr186609	regulatory region 186609	91 bp proximal
Rr368533	regulatory region 368533	1620 bp upstream
Rr400846	regulatory region 400846	1316 bp upstream
Rwdd4a	RWD domain containing 4A	1571 bp upstream
Trappc11	trafficking protein particle complex 11	within coordinates
Tssr77336	transcription start site region 77336	1565 bp upstream
Tssr81236	transcription start site region 81236	1331 bp downstream
Tssr81237	transcription start site region 81237	1348 bp downstream
Tssr81238	transcription start site region 81238	1365 bp downstream