rs49509522 SNP Detail

Summary

• ID
  rs49509522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8472237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGACCCAGAA TATTTAAAGG GCTATTTTAA CCACTACCAT
  TACGAGGGGC CGCCTTGAGT AGTGTTGCTA CCTTTTAACA AATGAGTTCT CCCTCAGCGA
  R
  TATGAAACAA AGTATCAAAC GGGACATTTC TTTTTCTGTG CAATTTTTAA AGTCTGAGGA
  CTTTTAAAAA GGTATTTCCG TCTTACACCA ACTTCCATTG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147049404	ENSMUSSNP7145692	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49509522					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8472237 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	733 bp proximal
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	130 bp upstream
Rr499033	regulatory region 499033	219 bp distal
Rr499034	regulatory region 499034	within coordinates
Rr499035	regulatory region 499035	1700 bp proximal
Tssr130591	transcription start site region 130591	852 bp upstream
Tssr130592	transcription start site region 130592	1980 bp upstream
Tssr133664	transcription start site region 133664	1411 bp downstream
Tssr133665	transcription start site region 133665	1465 bp downstream
Tssr133666	transcription start site region 133666	1682 bp downstream
Tssr133667	transcription start site region 133667	1696 bp downstream
Tssr133668	transcription start site region 133668	1856 bp downstream