rs49509810 SNP Detail

Summary

• ID
  rs49509810
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA GGAGGGGGTT TTCTAAGTTT
  G
  GTATGAGCAG AGGGATCAGG AAAAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132360160	ENSMUSSNP2549158	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323731055	CHEV_11_69497607	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49509810					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1812 bp distal
Rr450069	regulatory region 450069	1531 bp distal
Rr450070	regulatory region 450070	1142 bp distal
Rr450071	regulatory region 450071	within coordinates
Rr450072	regulatory region 450072	1144 bp proximal
Rr450073	regulatory region 450073	1439 bp proximal
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	218 bp upstream
Tssr102520	transcription start site region 102520	250 bp upstream
Tssr102521	transcription start site region 102521	291 bp upstream
Tssr102522	transcription start site region 102522	384 bp upstream
Tssr102523	transcription start site region 102523	446 bp upstream
Tssr102524	transcription start site region 102524	1832 bp upstream
Tssr108781	transcription start site region 108781	1170 bp downstream
Tssr108782	transcription start site region 108782	1232 bp downstream
Tssr108783	transcription start site region 108783	1415 bp downstream
Tssr108784	transcription start site region 108784	1432 bp downstream