rs49510228 SNP Detail

Summary

• ID
  rs49510228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116205887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATTGTT TCTTTTTAAA
  GCTTTCTATG AGCCCATGCA TGCCTTTTAG CCGTGTTCAT ACGTCTCACA CAGAGTCTAG
  CCTTGTTTCA GACTCAACGT GCAGAAAACA AGTTTTCTGG GGCCCCCTCC CACTGCACGT
  TTGGGCTCAT AGCAGATCAG GATGCAAATG GTAGTCAGAG GGAAATGCAC TGACCCCACC
  R
  TGCGCAGGAC CAAGAACGTA CTCAGTCAAG GCCGGATCTC ACCTGACCGG GCCCTTTAAT
  CTTTAGAAAG CTGCTCTGAA TCAGAGAACT GCTTAGTCGG ATGTATTTAT AATTACATAA
  TTATGATCAG TCCATTCATT AAGACAGAAA CACGGGTTCA TTTTCACAAA GTCTAATGGT
  ACATGGTATT TCAGATAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135669683	ENSMUSSNP1087075	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320894896	CHEV_3_116115156	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49510228					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116205887 () rs orientation: forward

Symbol	Name	Function Class
Cdc14a	CDC14 cell division cycle 14A	within coordinates
Rr70202	regulatory region 70202	within coordinates
Rr78756	regulatory region 78756	688 bp distal
Rr78757	regulatory region 78757	1765 bp proximal