rs49510794 SNP Detail

Summary

• ID
  rs49510794
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153005155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTAGTAA GGTGGCATTT ATAGCACTGC ACAGGGAAAT
  TCCTGCCCTG TACAGAGCTT TTAAGAGTTT ATAAGTTAGC AATATGTATT TCTGGTGTAC
  A
  TTTCTTCATT CAGCAAATAT TTGAATGTCC AGTGACTGCC AGGAACTAGG TATATGACTG
  TCAGAGGGTC ATGGTCCCAC CCTCGTGGGC CCACTCTCA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147986942	ENSMUSSNP6885006	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49510794					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153005155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1169 bp distal
Gm75427	predicted gene, 75427	1110 bp upstream
Gm75432	predicted gene, 75432	1726 bp upstream
Rr39415	regulatory region 39415	646 bp proximal
Rr55859	regulatory region 55859	554 bp distal
Rr397404	regulatory region 397404	1794 bp downstream
Tm9sf4	transmembrane 9 superfamily member 4	within coordinates
Tssr20873	transcription start site region 20873	1928 bp downstream
Tssr20874	transcription start site region 20874	1896 bp downstream
Tssr20875	transcription start site region 20875	1682 bp downstream
Tssr20876	transcription start site region 20876	1279 bp downstream
Tssr20877	transcription start site region 20877	1259 bp downstream
Tssr26883	transcription start site region 26883	1764 bp upstream