rs49512222 SNP Detail

Summary

• ID
  rs49512222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84354963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGATGC CCAGTGAGAC
  GCAATACCTC CCCTACATGC ACGCAAGCAC TTCTATACGC AAACCCCGCT CTTCACGCTC
  ATCAAATGGA TGTAGGAAAG CAAGAAAGCC CAGGTTCATC ATGATGGTGG AGAAGACCTA
  TCTTAAGACA TAAATCCTCT AAAGATTTTC CACCGTCAAA GACATGTGCT ACAAACATAG
  Y
  TATAATTAAA GCACATGTAG ATCTATCCAA GACATTTTTT TTTTCGTTTT CCACACTTAT
  CTCAAACAAG CAGCCCATTG CAGCAACAAA ATCTTCCTAT ATTGCTCCCT AGTGTCACAT
  TTTATTTCCT CAGACATTCT TTTGAAAACA TGCTCTAATG TCTTTCTTGC CTAAGACCAA
  ATATATAAGA CAGATCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60500616	NES16526868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49512222					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500616	NES16526868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84354963 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	207 bp upstream
Rr404934	regulatory region 404934	1582 bp upstream
Rr518505	regulatory region 518505	178 bp proximal
Rr518506	regulatory region 518506	279 bp proximal
Rr518507	regulatory region 518507	1570 bp proximal
Rr518508	regulatory region 518508	1701 bp proximal
Tssr139145	transcription start site region 139145	907 bp downstream