rs49512638 SNP Detail

Summary

• ID
  rs49512638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75547340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAGTTG CTAGAACAGG
  AGGCCGAGGC GGAGAGGGCT GCAGAACGCT CGAACCCAGG ACCATGTGGT CGCCCCTGGT
  GATGGCTAAG ACCCCTCCCA CTTGAGGACC AGGGGGCGTT GGCTGCGGTG GTGTTTGGCA
  GCAGCTTCGG GCTGGGTGGG TCAGGGGTGG GCAGGTCTGA GGGAGACAGG CCCTGGACTT
  K
  AGGGGTGACG GAGAAGCAGA GAACTGAGCA ACTAGGGCTA GAAACCAGGG TCAGGGGAGA
  CTTGGTGACC TCCCTGGAAT TTACAGCGGC TCCCAGTACC TTCCTCTTCC TTGACACCCC
  CCTACCCCAG CATTTTCTAG ATCTGCAGGC CCTCTTTGAA AGGAAAGCTC TGCTTAAGAC
  GCGGCTTGAG GGTCTAGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132438933	ENSMUSSNP3160666	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49512638					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75547340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3272	CpG island 3272	1798 bp distal
Cpgi3273	CpG island 3273	within coordinates
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	1638 bp downstream
Rr451247	regulatory region 451247	631 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	739 bp downstream
Tssr103027	transcription start site region 103027	658 bp downstream
Tssr103028	transcription start site region 103028	596 bp downstream
Tssr103029	transcription start site region 103029	577 bp downstream
Tssr103030	transcription start site region 103030	514 bp downstream
Tssr103031	transcription start site region 103031	477 bp downstream
Tssr103032	transcription start site region 103032	337 bp downstream