rs49513009 SNP Detail

Summary

• ID
  rs49513009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45158289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGAAAG CTGACTCACC
  TCAAGATGTG CTAAGGGATA GGGGGTGTGG CCATCTTCTT AATGAGATAA GGTACTTCCA
  GGCCAGAAGC CCCTCCCTAG GGGTAGCTGA TGGCTGCTCT CCATTGCTGA AACTGCCACT
  TTTTCAGATA TCTCATTTCA AAAGCATAAG GCTTCCTTCC CTCCCTTTCT CTGAGTATCA
  S
  CCCAAATCGT ACGCATGCTT ATCCCAACCC CCAGGACGCT CTCAATTCCG CAGAACCCCA
  TCTGGATACA TAGCTGCTTA ACGACCCATA GTGCTCAACG TCTCTACTTT TCCCATGTCT
  CAAACAGCCT GGTTTTCTCT TCCATCTCCC TCCTGGAACC TGCAAAAACT TACAACTTGT
  CTGCTCTATT ATTTTCCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003345	NES16128348	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49513009					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003345	NES16128348	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45158289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	805 bp proximal
Nucb1	nucleobindin 1	within coordinates
Rr400313	regulatory region 400313	1416 bp upstream
Rr646471	regulatory region 646471	907 bp distal
Rr646472	regulatory region 646472	within coordinates
Rr646473	regulatory region 646473	1451 bp proximal
Tssr72423	transcription start site region 72423	1486 bp downstream
Tssr72424	transcription start site region 72424	1501 bp downstream
Tssr72425	transcription start site region 72425	1535 bp downstream
Tulp2	TUB like protein 2	within coordinates