rs49513689 SNP Detail

Summary

• ID
  rs49513689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTGTC TGTATAACTG
  ACGGTTGATT GAACTTATTT CTGGGAGAAT GTCTGGTCAA GTCCACCATG ATTTTGCAAG
  CAAGCTGTTC GTTCCTGTTA GGTTGCTTTC CAATTACAGG ACCTTCACAG ACTTCTGAAA
  GATGTCCCTC ATATACCTGG CTTGAATATA TTTCTTTAAA AATAAAGATT ATATGATGAA
  R
  TGAACTGTGA ATTTCCTAAA ATTCAATGCT AGCATAATAA CATATACTCT TTTTATATAT
  GCACACATAT ATATGTTAAT AATGTATGCC ACTAAAACAT CAGGATGATG ATGATGATTT
  TGCTAGTGGA ATGTATCTTC TCTACTGGAA GGAGAGTAGT GGTAAAAGCC AGCAGGAGCA
  CCACCAACAA TACAGTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134853007	ENSMUSSNP427357	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49513689					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766625 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	754 bp upstream
Rr575767	regulatory region 575767	264 bp proximal
Rr575768	regulatory region 575768	765 bp proximal
Rr575769	regulatory region 575769	1640 bp proximal