rs49514074 SNP Detail

Summary

• ID
  rs49514074
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAGCC AGCTCCCAGG
  GCTGCGCGCC CGGGACCGAC CGGCCACCAT CCTGTGGCCG GGGCCCGGCA GCTCTCTCTG
  GCTCACAGTC CCTTGGGCTC GGGGTTCTGG GCTCCGGGCT TCACAGAGCA GAGACGTGAA
  AGAGGCGGAG TCACCGGGGA CTCGCCCGGG GGTCAGAGGC TGAGCGGGGC TGGGATGCCC
  K
  CTCCAAGCTC AGAGCCACCC AACAGCTGCC ACTGAGGAGA GAGAGCGAGG TCCTGGGAGG
  ACAAAGAGAG TCTCCGCAGC CGCCACAGCT GCCGCCGGAA CTCTGGGCAA ATCCCAGTGG
  ACAGAGTCCA GTTCTCCCAC TCCGGATTCC GGAGAGTTGC TGCAGACAAT GAGGCCCGCA
  GCGACAGCTC TCGGGACAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199546	NES16709297	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49514074					SNP	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199546	NES16709297	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178559 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	252 bp proximal
Tssr1554	transcription start site region 1554	252 bp downstream
Tssr47433	transcription start site region 47433	within coordinates
Tssr47434	transcription start site region 47434	25 bp upstream
Tssr47435	transcription start site region 47435	395 bp upstream
Tssr47436	transcription start site region 47436	564 bp upstream
Tssr47437	transcription start site region 47437	599 bp upstream
Tssr51988	transcription start site region 51988	84 bp upstream
Tssr51989	transcription start site region 51989	73 bp upstream
Tssr51990	transcription start site region 51990	53 bp upstream
Tssr51991	transcription start site region 51991	27 bp downstream
Tssr51992	transcription start site region 51992	97 bp downstream
Tssr51993	transcription start site region 51993	270 bp downstream
Tssr51994	transcription start site region 51994	294 bp downstream
Tssr51995	transcription start site region 51995	437 bp downstream
Tssr51996	transcription start site region 51996	597 bp downstream
Tssr51997	transcription start site region 51997	635 bp downstream
Tssr51998	transcription start site region 51998	675 bp downstream
Tssr51999	transcription start site region 51999	710 bp downstream
Tssr52000	transcription start site region 52000	731 bp downstream
Tssr52001	transcription start site region 52001	751 bp downstream
Tssr52002	transcription start site region 52002	771 bp downstream
Tssr52003	transcription start site region 52003	813 bp downstream