rs49515479 SNP Detail

Summary

• ID
  rs49515479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116353457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAACTG ATCATAAGAT
  TTTCTCAAAA GCTGGGCCAA TACCAGAAAA CAGTGTTGCA TAATTCACAC TAATTTCTTG
  GGAAAGATTA ATTATTTCCA TAGAACTGAA AGTGGCCCAC CAATATGAAG CAGAATAAAC
  ACCTCCTTTT AATTTGTTGT GCACTTGATA CCTCATTCAA CATACGGGGA AGGTCTGGGA
  W
  GTAGCTCAGT TGACGGTGCT TGCCCAGATT GCATGGAATC ACCATGTAAA ACCCAGCATG
  CCCTTAGCCC TAGCACCCCG GCTGATGCAG GAGGATCAGA TGGAAGGTAA GTGTTGAAGA
  CAATATGGAA ACACTTATTC TCTGGTAGGA AGTGTGCTTT AGGATAGCCC TCAGAAAACA
  ATCTGGGGAT AAATATCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436918	NES15941849	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49515479					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436918	NES15941849	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116353457 () rs orientation: forward

Symbol	Name	Function Class
Gm9761	predicted gene 9761	1127 bp downstream
Gm65478	predicted gene, 65478	within coordinates
Tssr35315	transcription start site region 35315	1734 bp downstream