rs49516231 SNP Detail

Summary

• ID
  rs49516231
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TATCAAAAAA AATCACTTTT TCATCCTGAC TGCCCAGTGT
  AAACCCCGAG GCACCTGTGT TATGCCCACT GTGGGAAATC TCCTGTTGTC AAAGAACTCA
  A
  GGCACACTAC GGTAGCAGCA ATGATAATGG TTGCTGCTGT CCCGGCAGTT TGCCCTGGGT
  ATGTCAGCCC AATTTGAGTG AACTTAGAGG AGTCAGCAGA C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144899160	ENSMUSSNP1149902	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49516231					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191142 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1131 bp downstream
Rr18062	regulatory region 18062	1342 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	1398 bp downstream