rs49516780 SNP Detail

Summary

• ID
  rs49516780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151027885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT GCCTATACGG GACTTGGCTG
  R
  TTCTCCAATT ACATAGCTCC CTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145714316	ENSMUSSNP5791461	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320054291	CHEV_1_152999264	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49516780					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151027885 () rs orientation: forward

Symbol	Name	Function Class
Gm36139	predicted gene, 36139	within coordinates
Gm70948	predicted gene, 70948	within coordinates
Rr420238	regulatory region 420238	990 bp proximal