rs49517214 SNP Detail

Summary

• ID
  rs49517214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76560233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCAGGT CCCCGAGGTG
  GACAGCCTTG GGGGTAGCTG GATCACCCCA GTCTGCTGGA GCTCACTTAT CTCCATGGGC
  AGAGAGCCCC GGGCCCTGGA TGGGTAGTTA GCATGATTGA GGCCTAAGAT AGCATGTATG
  GGCTAAGTTC CTGTCCTCAC AGTGACTGAC TGTGGGGACC CTGCTAGGGG AAGAGACTCA
  M
  GATCTGCATC CTTCCTCAGG GCCTGCCCTC GGCCACACCC TCTGCTCCCA GTGCCCCGTT
  GAGGAGGGAG GGAGGAAGAG AGTGAATGAA GCATGCTATG TCCCACAGTC CCCTCCTCCC
  AGGCCCTGTG ATGAAGACAC TGGGGATGTT CAGCCCAGGA CTTAGGTGAA GGCTCTAGTG
  CCCATGTGGA CAGGTGGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288901	NES16903811	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49517214					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288901	NES16903811	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76560233 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	Intron
Cpgi1751	CpG island 1751	773 bp distal
Rr434319	regulatory region 434319	1759 bp proximal
Tssr3254	transcription start site region 3254	1542 bp downstream
Tssr3255	transcription start site region 3255	1799 bp downstream
Tssr3256	transcription start site region 3256	1848 bp downstream
Tssr94201	transcription start site region 94201	887 bp downstream
Tssr98205	transcription start site region 98205	960 bp upstream
Tssr98206	transcription start site region 98206	882 bp upstream
Tssr98207	transcription start site region 98207	1579 bp downstream