rs49517560 SNP Detail

Summary

• ID
  rs49517560
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:90406218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAATAGGT CAGAGTTAAA ACACTACACT AATGACAGCT
  GAGTGCAATC AAACGTTTGA AAATTTACAT TTCAAATGCT ATCCCGAAAG TCCCCTATAC
  T
  CTCCCCCTGC ACTGCTCCCC TACCCACCCA CTCCTACTTC TTGGTCCGGG TATTCCCCTG
  TACTGGGGCA TATAAAGTTT GCAAGACCAA GGGGCCTCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146208344	ENSMUSSNP371819	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325509256	CHEV_17_90498130	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49517560					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:90406218 () rs orientation: forward

Symbol	Name	Function Class
Nrxn1	neurexin I	within coordinates
Rr336618	regulatory region 336618	1583 bp proximal