rs49517810 SNP Detail

Summary

• ID
  rs49517810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54751424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCCGGGG TCTTGAGCCT CAGCATCCCT GCACCCTCCT
  CCCGGCCCTG TCACCTTGGC GGGCTGACCC ATGGCTCCCC ACGCCGCTGA CTCCGCCTCT
  R
  AGGGCGCCCC CTCTTGGCAA CCAATCAGGG CCGGGGCACA GCTGGCGACG CTCCGCATAG
  CAACCAATCA GAATGCAACA TGTCCTTCCT AGCCCGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132140140	ENSMUSSNP6119566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49517810					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54751424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	within coordinates
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	189 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Rr447402	regulatory region 447402	1890 bp distal
Rr447403	regulatory region 447403	1074 bp distal
Rr447404	regulatory region 447404	within coordinates
Rr447405	regulatory region 447405	1 bp proximal
Rr447406	regulatory region 447406	200 bp proximal
Rr447407	regulatory region 447407	304 bp proximal
Rr447408	regulatory region 447408	506 bp proximal
Tssr3501	transcription start site region 3501	169 bp upstream
Tssr101539	transcription start site region 101539	192 bp upstream
Tssr101540	transcription start site region 101540	417 bp upstream
Tssr108005	transcription start site region 108005	within coordinates