rs49518011 SNP Detail

Summary

• ID
  rs49518011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90788546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTCAAA CTTCTTAAAG
  AGGAGCTGCT TTTCCCACTC TCATATCACA GACGAGTAAA CTGAAGCTGT GATTGAGAAC
  TGTCCACCCT GTGTGCACTC TGCTCTAAAG GCCCCATCCT GGGCTGCTTC TTGTCCTCCT
  TTTGGACCCA TGACATCCAT TGTATGCCTG TCTCTTTTCT GGCTGCTCTT CCAGAGAGGC
  R
  CACACATCTT GATCCTGCTG TATTTTAAAG AAGAGTGAGT GATAAAGACC TCCACACTCA
  AAAACAGCTG CCAAAGCTTT CAGGCTTTGA CAAAGCATTG AGTGCAGCAC ACAGTTGTTC
  TCACACCTGA TGTTCTTTGC CTGGCACCAG TCAGATAAAG GAAACTCCAT AATGTTGACA
  TTCCAGCTGG TCTCTTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908467	NES15947981	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49518011					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908467	NES15947981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90788546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1208 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr634330	regulatory region 634330	1452 bp distal
Rr634331	regulatory region 634331	951 bp distal
Rr634332	regulatory region 634332	1332 bp distal
Rr634333	regulatory region 634333	657 bp proximal
Tssr62052	transcription start site region 62052	1491 bp upstream
Tssr62053	transcription start site region 62053	1470 bp upstream
Tssr62054	transcription start site region 62054	1404 bp upstream
Tssr62055	transcription start site region 62055	1345 bp upstream